STRINGSTRING
Bra005580 protein (Brassica rapa) - STRING interaction network
"Bra005580" - AT2G32280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005580AT2G32280 (E=1e-078) | unknown protein (164 aa)    
Predicted Functional Partners:
Bra001326
AT3G09070 (E=7e-217) | glycine-rich protein (659 aa)
       
 
  0.937
Bra034051
AT3G09070 (E=5e-196) | glycine-rich protein (612 aa)
       
 
  0.791
Bra017140
AT2G38070 (E=7e-142) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF740 (InterPro-IPR008004); BEST Arabidopsis thaliana protein match is- glycine-rich protein (TAIR-AT3G09070.1); Has 75 Blast hits to 75 proteins in 20 species- Archae - 0; Bacteria - 1; Metazoa - 11; Fungi - 3; Plants - 40; Viruses - 0; Other Eukaryotes - 20 (source- NCBI BLink). (592 aa)
       
 
  0.791
Bra011422
AT4G33150 (E=0.0) | lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (1046 aa)
           
  0.406
Bra002352
AT5G21060 (E=4e-162) | homoserine dehydrogenase family protein (378 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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