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Bra005598 protein (Brassica rapa) - STRING interaction network
"Bra005598" - AT2G32480 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005598AT2G32480 (E=2e-190) | membrane-associated zinc metalloprotease, putative (440 aa)    
Predicted Functional Partners:
Bra006878
AT3G51800 (E=2e-173) ATG2 | ATG2; aminopeptidase/ metalloexopeptidase (796 aa)
   
   
  0.735
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
   
   
  0.640
Bra024064
AT2G36530 (E=2e-029) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (188 aa)
     
 
  0.617
Bra023072
AT2G36530 (E=9e-250) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (444 aa)
     
 
  0.617
Bra018378
AT2G29560 (E=1e-259) | enolase, putative (475 aa)
     
 
  0.617
Bra017231
AT2G36530 (E=3e-151) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (476 aa)
     
 
  0.617
Bra015942
AT1G74030 (E=8e-263) | enolase, putative (478 aa)
     
 
  0.617
Bra006961
AT2G36530 (E=4e-094) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (219 aa)
     
 
  0.617
Bra005261
AT1G74030 (E=1e-152) | enolase, putative (429 aa)
     
 
  0.617
Bra015924
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1516 aa)
         
  0.573
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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