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Bra005601 protein (Brassica rapa) - STRING interaction network
"Bra005601" - AT2G32520 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005601AT2G32520 (E=1e-125) | dienelactone hydrolase family protein (279 aa)    
Predicted Functional Partners:
Bra018277
AT2G31130 (E=4e-075) | unknown protein (373 aa)
           
  0.571
Bra005371
AT2G35040 (E=8e-217) | AICARFT/IMPCHase bienzyme family protein (756 aa)
         
  0.521
Bra037551
AT3G18900 (E=2e-188) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- F-box associated (InterPro-IPR006527), F-box associated type 1 (InterPro-IPR017451), Protein of unknown function DUF547 (InterPro-IPR006869); BEST Arabidopsis thaliana protein match is- F-box family protein (TAIR-AT3G18910.1); Has 812 Blast hits to 788 proteins in 57 species- Archae - 0; Bacteria - 47; Metazoa - 23; Fungi - 0; Plants - 717; Viruses - 0; Other Eukaryotes - 25 (source- NCBI BLink). (518 aa)
           
  0.514
Bra030164
AT2G25920 (E=6e-101) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- 3’-5’ exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (TAIR-AT2G25910.2); Has 84 Blast hits to 79 proteins in 34 species- Archae - 0; Bacteria - 23; Metazoa - 11; Fungi - 12; Plants - 23; Viruses - 0; Other Eukaryotes - 15 (source- NCBI BLink). (254 aa)
           
  0.514
Bra026505
AT5G23290 (E=2e-069) PDF5 | PDF5 (PREFOLDIN 5); unfolded protein binding (154 aa)
           
  0.510
Bra009668
AT5G23290 (E=2e-072) PDF5 | PDF5 (PREFOLDIN 5); unfolded protein binding (151 aa)
           
  0.510
Bra027370
AT3G14150 (E=2e-166) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (1001 aa)
   
   
  0.466
Bra039743
AT1G66120 (E=2e-268) | acyl-activating enzyme 11 (AAE11) (579 aa)
           
  0.461
Bra038189
AT1G65890 (E=1e-277) AAE12 | AAE12 (ACYL ACTIVATING ENZYME 12); catalytic (584 aa)
           
  0.461
Bra037198
AT1G20480 (E=2e-038) | 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein (187 aa)
           
  0.461
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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