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Bra005605 protein (Brassica rapa) - STRING interaction network
"Bra005605" - AT2G32600 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005605AT2G32600 (E=2e-111) | hydroxyproline-rich glycoprotein family protein (276 aa)    
Predicted Functional Partners:
Bra028740
AT5G06160 (E=5e-217) ATO | ATO (ATROPOS); nucleic acid binding / zinc ion binding (506 aa)
     
  0.997
Bra005882
AT5G06160 (E=1e-212) ATO | ATO (ATROPOS); nucleic acid binding / zinc ion binding (512 aa)
     
  0.997
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
     
  0.997
Bra016688
AT1G14650 (E=9e-276) | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (692 aa)
     
  0.995
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.990
Bra033729
AT5G44200 (E=2e-101) CBP20, ATCBP20 | CBP20 (CAP-BINDING PROTEIN 20); RNA binding / RNA cap binding (264 aa)
     
  0.990
Bra003140
AT5G06160 (E=5e-026) ATO | ATO (ATROPOS); nucleic acid binding / zinc ion binding (241 aa)
     
  0.987
Bra020904
AT4G21660 (E=4e-241) | proline-rich spliceosome-associated (PSP) family protein (576 aa)
     
  0.986
Bra013545
AT4G21660 (E=6e-230) | proline-rich spliceosome-associated (PSP) family protein (576 aa)
     
  0.986
Bra013145
AT2G13540 (E=0.0) ENS, ABH1, CBP80, ATCBP80 | ABH1 (ABA HYPERSENSITIVE 1); RNA cap binding (845 aa)
       
  0.985
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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