STRINGSTRING
Bra005611 protein (Brassica rapa) - STRING interaction network
"Bra005611" - AT2G32100 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005611AT2G32100 (E=1e-056) ATOFP16, OFP16 | OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) (237 aa)    
Predicted Functional Partners:
Bra005302
AT2G36050 (E=9e-086) ATOFP15, OFP15 | OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15) (270 aa)
     
   
  0.613
Bra039604
AT2G18500 (E=1e-084) ATOFP7, OFP7 | OFP7 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7) (315 aa)
           
  0.604
Bra009428
AT5G04820 (E=2e-089) ATOFP13, OFP13 | OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13) (262 aa)
           
  0.604
Bra006930
AT3G52540 (E=3e-053) ATOFP18, OFP18 | OFP18 (OVATE FAMILY PROTEIN 18) (258 aa)
           
  0.604
Bra002657
AT5G58360 (E=5e-051) ATOFP3, OFP3 | ATOFP3 (342 aa)
           
  0.600
Bra018316
AT2G30400 (E=8e-116) ATOFP2, OFP2 | OFP2 (OVATE FAMILY PROTEIN 2) (316 aa)
           
  0.574
Bra020055
AT5G19650 (E=5e-042) ATOFP8, OFP8 | OFP8 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8) (206 aa)
           
  0.573
Bra002252
AT5G19650 (E=1e-065) ATOFP8, OFP8 | OFP8 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8) (213 aa)
           
  0.573
Bra018317
AT2G30395 (E=2e-073) ATOFP17, OFP17 | OFP17 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 17) (203 aa)
           
  0.545
Bra013354
AT4G18830 (E=4e-130) ATOFP5, OFP5 | OFP5 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 5) (326 aa)
           
  0.543
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]