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Bra005613 protein (Brassica rapa) - STRING interaction network
"Bra005613" - AT2G32080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005613AT2G32080 (E=1e-139) PUR ALPHA-1 | PUR ALPHA-1; nucleic acid binding (291 aa)    
Predicted Functional Partners:
Bra025244
AT3G27010 (E=2e-108) AT-TCP20, PCF1, TCP20 | AT-TCP20; transcription factor (307 aa)
       
      0.881
Bra039096
AT3G27010 (E=7e-063) AT-TCP20, PCF1, TCP20 | AT-TCP20; transcription factor (278 aa)
       
      0.622
Bra027624
AT1G63160 (E=5e-173) | replication factor C 40 kDa, putative (334 aa)
       
      0.615
Bra020577
AT5G27740 (E=5e-178) EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding / nucleoside-triphosphatase/ nucleotide binding (353 aa)
       
      0.612
Bra009945
AT5G27740 (E=8e-187) EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding / nucleoside-triphosphatase/ nucleotide binding (354 aa)
       
      0.612
Bra024893
AT2G01275 (E=3e-120) | zinc finger (C3HC4-type RING finger) family protein (267 aa)
           
  0.541
Bra014329
AT2G01275 (E=6e-127) | zinc finger (C3HC4-type RING finger) family protein (262 aa)
           
  0.541
Bra035338
AT5G43010 (E=1e-209) RPT4A | RPT4A; ATPase (399 aa)
           
  0.459
Bra033655
AT5G43010 (E=8e-207) RPT4A | RPT4A; ATPase (399 aa)
           
  0.459
Bra030056
AT1G27630 (E=6e-161) CYCT1;3 | CYCT1;3 (CYCLIN T 1;3); cyclin-dependent protein kinase (313 aa)
       
 
  0.440
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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