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Bra005614 protein (Brassica rapa) - STRING interaction network
"Bra005614" - AT2G32070 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005614AT2G32070 (E=1e-148) | CCR4-NOT transcription complex protein, putative (276 aa)    
Predicted Functional Partners:
Bra037308
AT1G02080 (E=1e-193) | transcriptional regulator-related (1369 aa)
     
  0.975
Bra033222
AT1G02080 (E=0.0) | transcriptional regulator-related (2419 aa)
     
  0.975
Bra032664
AT1G02080 (E=0.0) | transcriptional regulator-related (2295 aa)
     
  0.975
Bra028531
AT1G02080 (E=0.0) | transcriptional regulator-related (2333 aa)
     
  0.975
Bra027361
AT1G02080 (E=1e-007) | transcriptional regulator-related (76 aa)
     
  0.975
Bra021787
AT1G02080 (E=1e-077) | transcriptional regulator-related (239 aa)
     
  0.975
Bra038426
AT1G31500 (E=6e-185) | endonuclease/exonuclease/phosphatase family protein (384 aa)
     
  0.974
Bra023195
AT1G31500 (E=9e-173) | endonuclease/exonuclease/phosphatase family protein (363 aa)
     
  0.974
Bra014566
AT3G58580 (E=0.0) | hydrolase (600 aa)
     
  0.974
Bra007403
AT3G58580 (E=6e-293) | hydrolase (597 aa)
     
  0.974
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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