STRINGSTRING
Bra005617 protein (Brassica rapa) - STRING interaction network
"Bra005617" - AT2G31940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005617AT2G31940 (E=2e-039) | unknown protein (119 aa)    
Predicted Functional Partners:
Bra031929
AT5G64240 (E=9e-136) AtMC3 | AtMC3 (metacaspase 3); cysteine-type endopeptidase (377 aa)
           
  0.465
Bra031029
AT1G18460 (E=2e-313) | lipase family protein (691 aa)
           
  0.465
Bra024277
AT5G64240 (E=2e-144) AtMC3 | AtMC3 (metacaspase 3); cysteine-type endopeptidase (386 aa)
           
  0.465
Bra022964
AT2G34040 (E=1e-281) | apoptosis inhibitory 5 (API5) family protein (551 aa)
           
  0.465
Bra015954
AT1G73920 (E=0.0) | lipase family protein (700 aa)
           
  0.465
Bra003822
AT1G73920 (E=0.0) | lipase family protein (699 aa)
           
  0.465
Bra027194
AT3G16060 (E=0.0) | kinesin motor family protein (689 aa)
           
  0.443
Bra023192
AT3G16060 (E=1e-227) | kinesin motor family protein (657 aa)
           
  0.443
Bra021158
AT3G16060 (E=0.0) | kinesin motor family protein (678 aa)
           
  0.443
Bra015396
AT1G05180 (E=1e-128) AXR1 | AXR1 (AUXIN RESISTANT 1); small protein activating enzyme (499 aa)
           
  0.443
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]