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Bra005625 protein (Brassica rapa) - STRING interaction network
"Bra005625" - AT2G31980 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005625AT2G31980 (E=4e-046) | cysteine proteinase inhibitor-related (136 aa)    
Predicted Functional Partners:
Bra010922
AT1G27730 (E=1e-082) STZ, ZAT10 | STZ (salt tolerance zinc finger); nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding (233 aa)
           
  0.438
Bra028876
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1967 aa)
           
  0.420
Bra009598
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1985 aa)
           
  0.420
Bra005717
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1849 aa)
           
  0.420
Bra024935
AT5G47550 (E=4e-031) | cysteine protease inhibitor, putative / cystatin, putative (120 aa)
           
  0.402
Bra022141
AT5G47550 (E=8e-031) | cysteine protease inhibitor, putative / cystatin, putative (120 aa)
           
  0.402
Bra017478
AT5G47550 (E=4e-030) | cysteine protease inhibitor, putative / cystatin, putative (115 aa)
           
  0.402
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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