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Bra005626 protein (Brassica rapa) - STRING interaction network
"Bra005626" - AT1G05520 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005626AT1G05520 (E=6e-023) | transport protein, putative (116 aa)    
Predicted Functional Partners:
Bra016539
AT1G18830 (E=1e-307) | transducin family protein / WD-40 repeat family protein (912 aa)
     
  0.993
Bra007747
AT3G63460 (E=0.0) | WD-40 repeat family protein (1099 aa)
     
  0.993
Bra007745
AT3G63460 (E=0.0) | WD-40 repeat family protein (1099 aa)
     
  0.993
Bra003525
AT3G63460 (E=0.0) | WD-40 repeat family protein (1106 aa)
     
  0.993
Bra040361
AT3G07100 (E=0.0) | protein transport protein Sec24, putative (1007 aa)
     
  0.986
Bra038450
AT3G07100 (E=1e-250) | protein transport protein Sec24, putative (580 aa)
     
  0.986
Bra034354
AT2G27460 (E=0.0) | sec23/sec24 transport family protein (746 aa)
     
  0.986
Bra029622
AT3G07100 (E=0.0) | protein transport protein Sec24, putative (1009 aa)
     
  0.986
Bra012017
AT2G27460 (E=0.0) | sec23/sec24 transport family protein (746 aa)
     
  0.986
Bra001235
AT3G07100 (E=0.0) | protein transport protein Sec24, putative (939 aa)
     
  0.986
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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