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Bra005630 protein (Brassica rapa) - STRING interaction network
"Bra005630" - AT5G22100 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005630AT5G22100 (E=9e-048) | RNA cyclase family protein (247 aa)    
Predicted Functional Partners:
Bra037279
AT2G17250 (E=3e-205) EMB2762 | EMB2762 (EMBRYO DEFECTIVE 2762) (597 aa)
     
    0.983
Bra002036
AT2G17250 (E=5e-094) EMB2762 | EMB2762 (EMBRYO DEFECTIVE 2762) (460 aa)
     
    0.983
Bra029576
AT4G05410 (E=2e-187) | transducin family protein / WD-40 repeat family protein (486 aa)
     
  0.982
Bra014236
AT4G05410 (E=1e-033) | transducin family protein / WD-40 repeat family protein (195 aa)
     
  0.982
Bra000814
AT4G05410 (E=5e-177) | transducin family protein / WD-40 repeat family protein (490 aa)
     
  0.982
Bra039543
AT3G21540 (E=1e-264) | transducin family protein / WD-40 repeat family protein (944 aa)
     
 
    0.978
Bra039889
AT5G15550 (E=1e-024) | transducin family protein / WD-40 repeat family protein (120 aa)
     
 
    0.974
Bra023524
AT5G15550 (E=4e-208) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
 
    0.974
Bra008691
AT5G15550 (E=7e-209) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
 
    0.974
Bra006306
AT5G15550 (E=2e-204) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
 
    0.974
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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