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Bra005632 protein (Brassica rapa) - STRING interaction network
"Bra005632" - AT2G32020 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005632AT2G32020 (E=2e-089) | GCN5-related N-acetyltransferase (GNAT) family protein (184 aa)    
Predicted Functional Partners:
Bra040853
AT5G39850 (E=2e-093) | 40S ribosomal protein S9 (RPS9C) (197 aa)
     
 
  0.633
Bra023536
AT5G15750 (E=5e-084) | RNA-binding S4 domain-containing protein (182 aa)
     
 
  0.633
Bra023511
AT5G15200 (E=1e-094) | 40S ribosomal protein S9 (RPS9B) (197 aa)
     
 
  0.633
Bra006289
AT5G15200 (E=5e-098) | 40S ribosomal protein S9 (RPS9B) (197 aa)
     
 
  0.633
Bra006320
AT5G15750 (E=3e-093) | RNA-binding S4 domain-containing protein (182 aa)
     
 
  0.633
Bra006289.1-P
AT5G15200 (E=5e-098) | 40S ribosomal protein S9 (RPS9B) (197 aa)
     
 
  0.633
Bra006590
AT5G20990 (E=0.0) B73, SIR4, CNX, CHL6, CNX1 | B73; molybdenum ion binding (672 aa)
              0.556
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
         
  0.547
Bra016559
AT1G18335 (E=2e-097) | GCN5-related N-acetyltransferase (GNAT) family protein (251 aa)
           
  0.541
Bra032024
AT3G02980 (E=6e-111) | GCN5-related N-acetyltransferase (GNAT) family protein (249 aa)
           
  0.499
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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