STRINGSTRING
Bra005643 protein (Brassica rapa) - STRING interaction network
"Bra005643" - AT2G31740 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005643AT2G31740 (E=0.0) | methyltransferase (758 aa)    
Predicted Functional Partners:
Bra016409
AT1G21700 (E=0.0) ATSWI3C, CHB4 | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding (793 aa)
     
 
  0.538
Bra021864
AT2G33610 (E=5e-189) ATSWI3B, CHB2 | ATSWI3B (SWITCH SUBUNIT 3); DNA binding (459 aa)
       
 
  0.530
Bra017943
AT1G21700 (E=1e-185) ATSWI3C, CHB4 | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding (617 aa)
       
 
  0.530
Bra011533
AT4G34430 (E=0.0) CHB3, ATSWI3D | CHB3; DNA binding / transcription factor/ zinc ion binding (932 aa)
       
 
  0.530
Bra004441
AT2G47620 (E=8e-155) ATSWI3A, CHB1 | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A); DNA binding (514 aa)
       
 
  0.530
Bra000456
AT2G47630 (E=2e-170) | esterase/lipase/thioesterase family protein (840 aa)
       
 
  0.530
Bra015766
AT2G33610 (E=3e-008) ATSWI3B, CHB2 | ATSWI3B (SWITCH SUBUNIT 3); DNA binding (262 aa)
       
      0.478
Bra008994
AT5G11040 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Transport protein Trs120 (InterPro-IPR013935); Has 230 Blast hits to 190 proteins in 91 species- Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 64; Plants - 15; Viruses - 0; Other Eukaryotes - 23 (source- NCBI BLink). (1183 aa)
           
  0.420
Bra013747
AT4G23940 (E=0.0) | FtsH protease, putative (1397 aa)
     
   
  0.401
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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