STRINGSTRING
Bra005655 protein (Brassica rapa) - STRING interaction network
"Bra005655" - AT2G31580 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
Bra005655AT2G31580 (E=2e-172) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- cultured cell; CONTAINS InterPro DOMAIN/s- tRNAHis guanylyltransferase (InterPro-IPR007537); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G32320.1); Has 640 Blast hits to 336 proteins in 155 species- Archae - 65; Bacteria - 47; Metazoa - 212; Fungi - 176; Plants - 43; Viruses - 2; Other Eukaryotes - 95 (source- NCBI BLink). (368 aa)    
Predicted Functional Partners:
Bra021434
AT3G02760 (E=0.0) | ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding (871 aa)
       
 
  0.487
Bra021413
AT2G47510 (E=6e-064) FUM1 | FUM1 (FUMARASE 1); catalytic/ fumarate hydratase (411 aa)
       
 
  0.487
Bra010749
AT3G46100 (E=2e-212) ATHRS1 | ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase (487 aa)
       
 
  0.487
Bra001061
AT3G02760 (E=0.0) | ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding (858 aa)
       
 
  0.487
Bra032932
AT3G26410 (E=3e-264) | methyltransferase/ nucleic acid binding (473 aa)
     
   
  0.485
Bra025204
AT3G26410 (E=4e-264) | methyltransferase/ nucleic acid binding (474 aa)
     
   
  0.485
Bra007742
AT3G63430 (E=2e-111) | unknown protein (525 aa)
           
  0.472
Bra040757
AT4G12790 (E=9e-145) | ATP-binding family protein (269 aa)
     
   
  0.425
Bra026358
AT4G27340 (E=5e-268) | Met-10+ like family protein ; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (614 aa)
     
   
  0.423
Bra007217
AT3G56120 (E=4e-094) | Met-10+ like family protein ; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (431 aa)
     
   
  0.423
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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