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Bra005662 protein (Brassica rapa) - STRING interaction network
"Bra005662" - AT5G01930 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005662AT5G01930 (E=8e-237) | (1-4)-beta-mannan endohydrolase, putative (634 aa)    
Predicted Functional Partners:
Bra017018
AT2G40290 (E=8e-158) | eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative (429 aa)
     
  0.989
Bra009215
AT5G05470 (E=1e-007) EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | EIF2 ALPHA; RNA binding / translation initiation factor (377 aa)
     
  0.989
Bra009212
AT5G05470 (E=1e-007) EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | EIF2 ALPHA; RNA binding / translation initiation factor (453 aa)
     
  0.989
Bra004970
AT2G40290 (E=3e-155) | eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative (342 aa)
     
  0.989
Bra000182
AT2G40290 (E=1e-162) | eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative (342 aa)
     
  0.989
Bra035390
AT2G04520 (E=2e-062) | eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative ; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits (145 aa)
   
  0.983
Bra018827
AT2G04520 (E=6e-029) | eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative (103 aa)
   
  0.983
Bra015153
AT2G04520 (E=2e-061) | eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative ; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits (145 aa)
   
  0.983
Bra013204
AT2G04520 (E=1e-066) | eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative ; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits (145 aa)
   
  0.983
Bra005423
AT2G34420 (E=8e-101) LHB1B2, LHCB1.5 | LHB1B2; chlorophyll binding (496 aa)
   
  0.983
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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