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Bra005665 protein (Brassica rapa) - STRING interaction network
"Bra005665" - AT5G01860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005665AT5G01860 (E=3e-059) | zinc finger (C2H2 type) family protein (228 aa)    
Predicted Functional Partners:
Bra001026
AT3G01030 (E=2e-026) | nucleic acid binding / transcription factor/ zinc ion binding (318 aa)
           
  0.552
Bra002857
AT1G60280 (E=4e-090) ANAC023 | ANAC023 (Arabidopsis NAC domain containing protein 23); transcription factor (324 aa)
           
  0.541
Bra002836
AT5G56200 (E=3e-060) | zinc finger (C2H2 type) family protein (465 aa)
           
  0.504
Bra020346
AT5G58850 (E=5e-168) ATMYB119, MYB119 | MYB119 (MYB DOMAIN PROTEIN 119); DNA binding / transcription factor (423 aa)
           
  0.457
Bra006744
AT5G58850 (E=7e-167) ATMYB119, MYB119 | MYB119 (MYB DOMAIN PROTEIN 119); DNA binding / transcription factor (423 aa)
           
  0.457
Bra028726
AT5G06620 (E=6e-157) ATXR4, SDG38 | SDG38 (SET DOMAIN PROTEIN 38) (329 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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