STRINGSTRING
Bra005668 protein (Brassica rapa) - STRING interaction network
"Bra005668" - AT5G01750 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005668AT5G01750 (E=2e-103) | unknown protein (221 aa)    
Predicted Functional Partners:
Bra028909
AT5G01740 (E=2e-081) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 18 plant structures; EXPRESSED DURING- 9 growth stages; CONTAINS InterPro DOMAIN/s- Wound-induced protein, Wun1 (InterPro-IPR009798); BEST Arabidopsis thaliana protein match is- SAG20 (SENESCENCE ASSOCIATED GENE 20) (TAIR-AT3G10985.1); Has 49 Blast hits to 49 proteins in 12 species- Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (160 aa)
           
  0.583
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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