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Bra005670 protein (Brassica rapa) - STRING interaction network
"Bra005670" - AT5G01710 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
Bra005670AT5G01710 (E=2e-239) | LOCATED IN- endomembrane system; EXPRESSED IN- sperm cell, male gametophyte, pollen tube; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s- Methyltransferase FkbM (InterPro-IPR006342); BEST Arabidopsis thaliana protein match is- methyltransferase (TAIR-AT4G24805.1); Has 224 Blast hits to 223 proteins in 16 species- Archae - 0; Bacteria - 7; Metazoa - 38; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 42 (source- NCBI BLink). (508 aa)    
Predicted Functional Partners:
Bra027755
AT1G64140 (E=5e-285) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- sperm cell, male gametophyte, pollen tube; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is- loricrin-related (TAIR-AT5G64550.1); Has 2298 Blast hits to 1429 proteins in 121 species- Archae - 0; Bacteria - 42; Metazoa - 1626; Fungi - 29; Plants - 243; Viruses - 9; Other Eukaryotes - 349 (source- NCBI BLink). (646 aa)
           
  0.583
Bra016268
AT1G69750 (E=1e-049) COX19-2, ATCOX19-2 | cox19 family protein (98 aa)
           
  0.583
Bra031914
AT5G09670 (E=1e-201) | loricrin-related (565 aa)
           
  0.550
Bra027679
AT1G64140 (E=1e-268) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- sperm cell, male gametophyte, pollen tube; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is- loricrin-related (TAIR-AT5G64550.1); Has 2298 Blast hits to 1429 proteins in 121 species- Archae - 0; Bacteria - 42; Metazoa - 1626; Fungi - 29; Plants - 243; Viruses - 9; Other Eukaryotes - 349 (source- NCBI BLink). (650 aa)
           
  0.550
Bra024308
AT5G64550 (E=1e-300) | loricrin-related (598 aa)
           
  0.550
Bra033214
AT1G02160 (E=4e-028) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- CHCH (InterPro-IPR010625); Has 45 Blast hits to 45 proteins in 24 species- Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 29; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (73 aa)
           
  0.549
Bra032469
AT1G05310 (E=3e-198) | pectinesterase family protein (400 aa)
           
  0.546
Bra032434
AT1G06145 (E=1e-184) EMB1444 | EMB1444 (EMBRYO DEFECTIVE 1444) (395 aa)
           
  0.511
Bra021715
AT1G06150 (E=2e-221) | transcription factor (771 aa)
           
  0.505
Bra031771
AT1G11580 (E=2e-238) ATPMEPCRA, PMEPCRA | PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (452 aa)
           
  0.501
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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