STRINGSTRING
Bra005674 protein (Brassica rapa) - STRING interaction network
"Bra005674" - AT4G00020 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005674AT4G00020 (E=3e-211) MEE43, EDA20, BRCA2(IV), BRCA2A | protein binding / single-stranded DNA binding (1060 aa)    
Predicted Functional Partners:
Bra030700
AT1G07745 (E=1e-063) ATRAD51D, RAD51D, SSN1 | RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D); ATP binding / DNA binding / DNA-dependent ATPase (265 aa)
     
  0.973
Bra006580
AT5G20850 (E=6e-192) ATRAD51, RAD51 | ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / sequence-specific DNA binding (342 aa)
     
  0.972
Bra002334
AT5G20850 (E=1e-189) ATRAD51, RAD51 | ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / sequence-specific DNA binding (342 aa)
     
  0.971
Bra040676
AT2G19490 (E=3e-173) | recA family protein (427 aa)
     
  0.971
Bra035691
AT2G28560 (E=7e-182) ATRAD51B, RAD51B | RAD51B; recombinase (464 aa)
     
  0.971
Bra031084
AT2G19490 (E=6e-164) | recA family protein (430 aa)
     
  0.971
Bra008393
AT1G79050 (E=7e-212) | DNA repair protein recA (435 aa)
     
  0.971
Bra003623
AT1G79050 (E=1e-214) | DNA repair protein recA (430 aa)
     
  0.971
Bra001288
AT3G10140 (E=6e-168) RECA3 | RECA3 (recA homolog 3); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (390 aa)
     
  0.971
Bra037372
AT5G57450 (E=2e-052) XRCC3, ATXRCC3 | XRCC3; ATP binding / damaged DNA binding / protein binding / single-stranded DNA binding (259 aa)
     
  0.957
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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