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Bra005682 protein (Brassica rapa) - STRING interaction network
"Bra005682" - AT5G01520 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005682AT5G01520 (E=6e-124) | zinc finger (C3HC4-type RING finger) family protein (240 aa)    
Predicted Functional Partners:
Bra031225
AT2G22010 (E=0.0) RKP | RKP (Related to KPC1); protein binding / zinc ion binding (1274 aa)
     
 
    0.669
Bra031783
AT1G11800 (E=2e-176) | endonuclease/exonuclease/phosphatase family protein (420 aa)
       
      0.594
Bra029788
AT3G09770 (E=5e-119) | zinc finger (C3HC4-type RING finger) family protein (381 aa)
       
  0.577
Bra016087
AT1G72070 (E=5e-032) | DNAJ heat shock N-terminal domain-containing protein (201 aa)
           
  0.483
Bra019382
AT3G46620 (E=3e-139) | zinc finger (C3HC4-type RING finger) family protein (373 aa)
         
  0.431
Bra024628
AT1G23980 (E=7e-122) | zinc finger (C3HC4-type RING finger) family protein (366 aa)
         
  0.427
Bra002470
AT5G60580 (E=2e-216) | zinc finger (C3HC4-type RING finger) family protein (480 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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