STRINGSTRING
Bra005686 protein (Brassica rapa) - STRING interaction network
"Bra005686" - AT3G49420 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005686AT3G49420 (E=4e-066) | Got1-like family protein (140 aa)    
Predicted Functional Partners:
Bra027391
AT3G13870 (E=8e-202) RHD3 | RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding (770 aa)
       
      0.735
Bra025089
AT5G45160 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein ; Probable GTP-binding protein that may be involved in cell development (831 aa)
       
      0.735
Bra016026
AT1G72960 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein ; Probable GTP-binding protein that may be involved in cell development (1141 aa)
       
      0.735
Bra003863
AT1G72960 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein ; Probable GTP-binding protein that may be involved in cell development (1200 aa)
       
      0.735
Bra001525
AT3G13870 (E=0.0) RHD3 | RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding ; Probable GTP-binding protein that may be involved in cell development (805 aa)
       
      0.735
Bra019099
AT4G26570 (E=8e-113) ATCBL3, CBL3 | ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3); calcium ion binding (449 aa)
     
 
  0.620
Bra026491
AT5G23550 (E=2e-066) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- SFT2-like (InterPro-IPR011691); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G24170.1); Has 455 Blast hits to 455 proteins in 131 species- Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 96; Plants - 62; Viruses - 0; Other Eukaryotes - 102 (source- NCBI BLink). (211 aa)
       
 
  0.620
Bra026423
AT4G26550 (E=2e-108) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- SFT2-like (InterPro-IPR011691); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G56020.1); Has 452 Blast hits to 452 proteins in 136 species- Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 89; Plants - 61; Viruses - 0; Other Eukaryotes - 104 (source- NCBI BLink). (226 aa)
       
 
  0.620
Bra019100
AT4G26550 (E=3e-099) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- SFT2-like (InterPro-IPR011691); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G56020.1); Has 452 Blast hits to 452 proteins in 136 species- Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 89; Plants - 61; Viruses - 0; Other Eukaryotes - 104 (source- NCBI BLink). (452 aa)
       
 
  0.620
Bra009740
AT5G24170 (E=3e-070) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- SFT2-like (InterPro-IPR011691); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G23550.1); Has 462 Blast hits to 462 proteins in 127 species- Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 92; Plants - 65; Viruses - 0; Other Eukaryotes - 99 (source- NCBI BLink). (163 aa)
       
 
  0.620
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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