STRINGSTRING
Bra005689 protein (Brassica rapa) - STRING interaction network
"Bra005689" - AT5G01360 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra005689AT5G01360 (E=2e-227) | EXPRESSED IN- 13 plant structures; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF231, plant (InterPro-IPR004253); BEST Arabidopsis thaliana protein match is- ESK1 (ESKIMO 1) (TAIR-AT3G55990.1); Has 710 Blast hits to 702 proteins in 19 species- Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 705; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (432 aa)    
Predicted Functional Partners:
Bra029587
AT3G06550 (E=1e-288) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- cultured cell; CONTAINS InterPro DOMAIN/s- Cas1p-like (InterPro-IPR012419); BEST Arabidopsis thaliana protein match is- O-acetyltransferase family protein (TAIR-AT2G34410.2); Has 185 Blast hits to 183 proteins in 57 species- Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 25; Plants - 56; Viruses - 0; Other Eukaryotes - 7 (source- NCBI BLink). (554 aa)
           
  0.480
Bra002963
AT5G54690 (E=1e-277) GAUT12, LGT6, IRX8 | GAUT12 (GALACTURONOSYLTRANSFERASE 12); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (535 aa)
     
   
  0.442
Bra022739
AT5G54690 (E=4e-266) GAUT12, LGT6, IRX8 | GAUT12 (GALACTURONOSYLTRANSFERASE 12); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (534 aa)
     
   
  0.425
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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