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Bra005690 protein (Brassica rapa) - STRING interaction network
"Bra005690" - AT5G01340 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005690AT5G01340 (E=5e-167) | mitochondrial substrate carrier family protein (403 aa)    
Predicted Functional Partners:
Bra024427
AT5G65890 (E=3e-232) ACR1 | ACR1 (ACT Domain Repeat 1); amino acid binding (477 aa)
           
  0.504
Bra039746
AT1G65930 (E=2e-228) | isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative (412 aa)
     
   
  0.490
Bra038201
AT1G65930 (E=7e-225) | isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative (419 aa)
     
   
  0.490
Bra006262
AT5G14590 (E=3e-250) | isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative (483 aa)
     
   
  0.490
Bra004134
AT1G65930 (E=3e-228) | isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative (412 aa)
     
   
  0.490
Bra003336
AT1G54340 (E=4e-195) ICDH | ICDH (ISOCITRATE DEHYDROGENASE); isocitrate dehydrogenase (NADP+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (379 aa)
     
   
  0.490
Bra019570
AT3G48850 (E=5e-145) | mitochondrial phosphate transporter, putative (398 aa)
           
  0.468
Bra002048
AT2G17270 (E=1e-053) | mitochondrial substrate carrier family protein (213 aa)
           
  0.468
Bra024064
AT2G36530 (E=2e-029) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (188 aa)
     
   
  0.443
Bra023072
AT2G36530 (E=9e-250) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (444 aa)
     
   
  0.443
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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