STRINGSTRING
Bra005696 protein (Brassica rapa) - STRING interaction network
"Bra005696" - AT5G01090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005696AT5G01090 (E=5e-129) | legume lectin family protein (356 aa)    
Predicted Functional Partners:
Bra036881
AT4G25000 (E=2e-208) ATAMY1, AMY1 | AMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase (388 aa)
       
      0.612
Bra016262
AT1G69830 (E=0.0) ATAMY3, AMY3 | AMY3 (ALPHA-AMYLASE-LIKE 3); alpha-amylase (896 aa)
       
      0.612
Bra015784
AT1G76130 (E=3e-244) ATAMY2, AMY2 | AMY2 (ALPHA-AMYLASE-LIKE 2); alpha-amylase/ calcium ion binding / catalytic/ cation binding (413 aa)
       
      0.612
Bra033992
AT1G67550 (E=0.0) URE | URE (UREASE); urease (835 aa)
           
  0.491
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]