STRINGSTRING
Bra005703 protein (Brassica rapa) - STRING interaction network
"Bra005703" - AT5G02030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005703AT5G02030 (E=6e-206) LSN, PNY, HB-6, BLR, RPL, BLH9, VAN | RPL (REPLUMLESS); DNA binding / sequence-specific DNA binding / transcription factor (570 aa)    
Predicted Functional Partners:
Bra000638
AT4G08150 (E=9e-163) KNAT1, BP, BP1 | KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor (387 aa)
       
 
0.679
Bra027050
AT1G62360 (E=9e-163) STM, BUM1, SHL, WAM1, BUM, WAM | STM (SHOOT MERISTEMLESS); transcription factor (382 aa)
       
 
0.671
Bra010705
AT4G39100 (E=4e-118) SHL1 | SHL1 (short life); transcription factor/ zinc-mediated transcriptional activator (336 aa)
       
      0.612
Bra024593
AT1G23380 (E=1e-082) KNAT6, KNAT6L, KNAT6S | KNAT6; DNA binding / transcription activator/ transcription factor (209 aa)
       
 
  0.600
Bra024592
AT1G23380 (E=6e-082) KNAT6, KNAT6L, KNAT6S | KNAT6; DNA binding / transcription activator/ transcription factor (212 aa)
       
 
  0.600
Bra018060
AT3G48430 (E=0.0) REF6 | REF6 (RELATIVE OF EARLY FLOWERING 6); nucleic acid binding / transcription factor/ zinc ion binding (1385 aa)
       
  0.597
Bra009474
AT5G04240 (E=0.0) ELF6 | ELF6 (EARLY FLOWERING 6); transcription factor (1160 aa)
       
  0.597
Bra022350
AT3G18730 (E=0.0) TSK, MGO3, BRU1 | TSK (TONSOKU); protein binding (1324 aa)
       
  0.538
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.529
Bra013150
AT2G12550 (E=2e-225) | ubiquitin-associated (UBA)/TS-N domain-containing protein (553 aa)
       
      0.520
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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