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Bra005705 protein (Brassica rapa) - STRING interaction network
"Bra005705" - AT5G02050 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005705AT5G02050 (E=1e-096) | mitochondrial glycoprotein family protein / MAM33 family protein (259 aa)    
Predicted Functional Partners:
Bra014107
AT2G26060 (E=4e-080) emb1345 | emb1345 (embryo defective 1345); nucleotide binding ; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins (633 aa)
       
      0.621
Bra007771
AT2G26060 (E=3e-173) emb1345 | emb1345 (embryo defective 1345); nucleotide binding ; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins (346 aa)
       
      0.621
Bra014343
AT2G01100 (E=2e-012) | unknown protein (231 aa)
           
  0.551
Bra038890
AT3G51270 (E=1e-198) | ATP binding / catalytic/ protein serine/threonine kinase (456 aa)
           
  0.545
Bra036823
AT3G51270 (E=2e-194) | ATP binding / catalytic/ protein serine/threonine kinase (452 aa)
           
  0.545
Bra019126
AT4G26050 (E=4e-131) | leucine-rich repeat family protein (395 aa)
           
  0.544
Bra013944
AT4G26050 (E=3e-123) | leucine-rich repeat family protein (398 aa)
           
  0.544
Bra040632
AT1G66740 (E=4e-090) AtSP7, SP7, SGA2, ASF1A | SGA2 (196 aa)
       
      0.520
Bra004186
AT1G66740 (E=1e-082) AtSP7, SP7, SGA2, ASF1A | SGA2 (199 aa)
       
      0.520
Bra000614
AT5G50240 (E=8e-117) PIMT2 | PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2); protein-L-isoaspartate (D-aspartate) O-methyltransferase (267 aa)
           
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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