STRINGSTRING
Bra005709 protein (Brassica rapa) - STRING interaction network
"Bra005709" - AT5G02120 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005709AT5G02120 (E=1e-040) OHP | OHP (ONE HELIX PROTEIN) (111 aa)    
Predicted Functional Partners:
Bra036739
AT1G34000 (E=4e-063) OHP2 | OHP2 (ONE-HELIX PROTEIN 2) (171 aa)
     
   
  0.607
Bra028025
AT1G34000 (E=8e-062) OHP2 | OHP2 (ONE-HELIX PROTEIN 2) (172 aa)
     
   
  0.607
Bra036950
AT1G44575 (E=2e-106) NPQ4, PSBS | NPQ4 (NONPHOTOCHEMICAL QUENCHING); chlorophyll binding / xanthophyll binding (265 aa)
     
   
  0.566
Bra014024
AT1G44575 (E=3e-109) NPQ4, PSBS | NPQ4 (NONPHOTOCHEMICAL QUENCHING); chlorophyll binding / xanthophyll binding (265 aa)
     
   
  0.566
Bra015826
AT1G75690 (E=3e-063) | chaperone protein dnaJ-related (159 aa)
     
        0.533
Bra008216
AT1G75690 (E=4e-070) | chaperone protein dnaJ-related (151 aa)
     
        0.533
Bra033982
AT1G67740 (E=8e-053) PSBY, YCF32 | PSBY (200 aa)
     
   
  0.525
Bra004252
AT1G67740 (E=1e-047) PSBY, YCF32 | PSBY (195 aa)
     
   
  0.525
Bra004075
AT1G67740 (E=5e-053) PSBY, YCF32 | PSBY (201 aa)
     
   
  0.525
Bra041111
AT5G47110 (E=8e-103) | lil3 protein, putative (258 aa)
     
   
  0.523
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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