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Bra005714 protein (Brassica rapa) - STRING interaction network
"Bra005714" - AT5G02270 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005714AT5G02270 (E=2e-051) ATNAP9, NAP9 | ATNAP9; transporter (301 aa)    
Predicted Functional Partners:
Bra032750
AT4G13940 (E=4e-261) HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase/ copper ion binding (485 aa)
       
      0.735
Bra028345
AT3G23810 (E=6e-260) SAHH2, ATSAHH2 | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (485 aa)
       
      0.735
Bra014984
AT3G23810 (E=4e-271) SAHH2, ATSAHH2 | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (485 aa)
       
      0.735
Bra014002
AT4G13940 (E=3e-253) HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase/ copper ion binding (478 aa)
       
      0.735
Bra001921
AT3G23810 (E=1e-272) SAHH2, ATSAHH2 | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (485 aa)
       
      0.735
Bra023668
AT5G18230 (E=3e-041) | transcription regulator NOT2/NOT3/NOT5 family protein (340 aa)
           
  0.400
Bra006447
AT5G18230 (E=8e-232) | transcription regulator NOT2/NOT3/NOT5 family protein (536 aa)
           
  0.400
Bra006446
AT5G18230 (E=0.0) | transcription regulator NOT2/NOT3/NOT5 family protein (845 aa)
           
  0.400
Bra002144
AT5G18230 (E=0.0) | transcription regulator NOT2/NOT3/NOT5 family protein (834 aa)
           
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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