STRINGSTRING
Bra005721 protein (Brassica rapa) - STRING interaction network
"Bra005721" - AT5G02390 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005721AT5G02390 (E=7e-145) | unknown protein (778 aa)    
Predicted Functional Partners:
Bra017722
AT4G35560 (E=0.0) | FUNCTIONS IN- molecular_function unknown; LOCATED IN- CUL4 RING ubiquitin ligase complex; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 7 growth stages; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat (InterPro-IPR001680), WD40/YVTN repeat-like (InterPro-IPR015943), Lethal giant larvae (Lgl) like, C-terminal (InterPro-IPR013905); BEST Arabidopsis thaliana protein match is- transducin family protein / WD-40 repeat family protein (TAIR-AT5G05570.1); Has 562 Blast hits to 546 proteins in 129 species- Archae - 0; Bacteria - 20; Meta [...] (953 aa)
           
  0.483
Bra029360
AT5G23160 (E=5e-068) | unknown protein (252 aa)
     
   
  0.455
Bra025657
AT5G39650 (E=6e-108) | unknown protein (244 aa)
     
   
  0.455
Bra009332
AT5G08240 (E=6e-087) | unknown protein (261 aa)
     
   
  0.455
Bra007560
AT3G60780 (E=4e-099) | unknown protein (217 aa)
           
  0.445
Bra007557
AT3G60780 (E=3e-102) | unknown protein (219 aa)
           
  0.445
Bra011631
AT4G35700 (E=2e-036) | zinc finger (C2H2 type) family protein (252 aa)
     
   
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (23%) [HD]