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Bra005731 protein (Brassica rapa) - STRING interaction network
"Bra005731" - AT5G02580 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005731AT5G02580 (E=1e-037) | unknown protein (91 aa)    
Predicted Functional Partners:
Bra026361
AT4G27310 (E=6e-051) | zinc finger (B-box type) family protein (230 aa)
           
  0.476
Bra010408
AT4G27310 (E=1e-043) | zinc finger (B-box type) family protein (241 aa)
           
  0.476
Bra039455
AT3G05180 (E=7e-176) | GDSL-motif lipase/hydrolase family protein (380 aa)
           
  0.406
Bra030108
AT1G28580 (E=1e-178) | GDSL-motif lipase, putative (395 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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