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Bra005733 protein (Brassica rapa) - STRING interaction network
"Bra005733" - AT5G03340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005733AT5G03340 (E=0.0) | cell division cycle protein 48, putative / CDC48, putative (1104 aa)    
Predicted Functional Partners:
Bra040419
AT3G63000 (E=7e-209) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (413 aa)
     
  0.994
Bra038085
AT4G15410 (E=9e-118) PUX5 | PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma); protein binding (374 aa)
     
  0.994
Bra029487
AT4G04210 (E=8e-116) PUX4 | PUX4; protein binding (303 aa)
     
  0.994
Bra013593
AT4G22150 (E=1e-139) PUX3 | PUX3; protein binding (302 aa)
     
  0.994
Bra012791
AT4G15410 (E=1e-143) PUX5 | PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma); protein binding (421 aa)
     
  0.994
Bra000787
AT4G04210 (E=5e-120) PUX4 | PUX4; protein binding (311 aa)
     
  0.994
Bra024866
AT2G01650 (E=1e-165) PUX2 | PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2); nucleic acid binding / zinc ion binding (447 aa)
       
  0.993
Bra038084
AT4G15420 (E=3e-280) | PRLI-interacting factor K (560 aa)
     
  0.979
Bra035652
AT2G29070 (E=2e-148) | ubiquitin fusion degradation UFD1 family protein (308 aa)
     
  0.978
Bra030307
AT2G21270 (E=9e-137) | ubiquitin fusion degradation UFD1 family protein (321 aa)
     
  0.978
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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