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Bra005734 protein (Brassica rapa) - STRING interaction network
"Bra005734" - AT5G03330 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005734AT5G03330 (E=2e-162) | OTU-like cysteine protease family protein (351 aa)    
Predicted Functional Partners:
Bra014381
AT3G62940 (E=8e-121) | OTU-like cysteine protease family protein (311 aa)
           
  0.529
Bra000036
AT2G38025 (E=2e-082) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; CONTAINS InterPro DOMAIN/s- Ovarian tumour, otubain (InterPro-IPR003323); BEST Arabidopsis thaliana protein match is- OTU-like cysteine protease family protein (TAIR-AT3G57810.3); Has 100 Blast hits to 100 proteins in 30 species- Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 8 (source- NCBI BLink). (229 aa)
           
  0.495
Bra007716
AT3G62940 (E=5e-062) | OTU-like cysteine protease family protein (305 aa)
           
  0.422
Bra007360
AT3G57810 (E=6e-025) | OTU-like cysteine protease family protein (246 aa)
           
  0.422
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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