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Bra005740 protein (Brassica rapa) - STRING interaction network
"Bra005740" - AT5G03170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005740AT5G03170 (E=1e-092) FLA11 | FLA11 (243 aa)    
Predicted Functional Partners:
Bra033714
AT5G44030 (E=0.0) CESA4, IRX5, NWS2 | CESA4 (CELLULOSE SYNTHASE A4); cellulose synthase/ transferase, transferring glycosyl groups (1052 aa)
     
   
  0.534
Bra012578
AT4G18780 (E=0.0) CESA8, IRX1, ATCESA8, LEW2 | IRX1 (IRREGULAR XYLEM 1); cellulose synthase/ transferase, transferring glycosyl groups (985 aa)
     
   
  0.515
Bra000566
AT2G24450 (E=8e-112) FLA3 | FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR) (280 aa)
           
  0.476
Bra007849
AT2G24450 (E=4e-090) FLA3 | FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR) (280 aa)
           
  0.447
Bra026350
AT4G27435 (E=7e-084) | unknown protein (173 aa)
     
   
  0.445
Bra023528
AT5G15630 (E=3e-242) COBL4, IRX6 | IRX6 (434 aa)
     
   
  0.420
Bra006313
AT5G15630 (E=2e-244) COBL4, IRX6 | IRX6 (849 aa)
     
   
  0.420
Bra025535
AT5G40940 (E=3e-059) FLA20 | FLA20 (PUTATIVE FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20) (370 aa)
           
  0.408
Bra038741
AT3G12660 (E=9e-049) FLA14 | FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR) (264 aa)
           
  0.406
Bra034746
AT3G12660 (E=3e-046) FLA14 | FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR) (270 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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