STRINGSTRING
Bra005753 protein (Brassica rapa) - STRING interaction network
"Bra005753" - AT3G28410 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005753AT3G28410 (E=6e-117) | F-box family protein (469 aa)    
Predicted Functional Partners:
Bra034004
AT1G67340 (E=7e-157) | zinc finger (MYND type) family protein / F-box family protein (377 aa)
           
  0.483
Bra016200
AT1G70590 (E=5e-156) | F-box family protein (346 aa)
           
  0.483
Bra004220
AT1G67340 (E=2e-176) | zinc finger (MYND type) family protein / F-box family protein (372 aa)
           
  0.483
Bra001142
AT3G16740 (E=4e-121) | F-box family protein (389 aa)
           
  0.451
Bra018977
AT1G52620 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein (802 aa)
           
  0.445
Bra035607
AT5G56180 (E=2e-224) ATARP8, ARP8 | ATARP8 (ACTIN-RELATED PROTEIN 8); structural constituent of cytoskeleton (466 aa)
           
  0.418
Bra011997
AT2G27800 (E=5e-176) | CONTAINS InterPro DOMAIN/s- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G27300.1); Has 11283 Blast hits to 3897 proteins in 129 species- Archae - 1; Bacteria - 2; Metazoa - 118; Fungi - 74; Plants - 10832; Viruses - 0; Other Eukaryotes - 256 (source- NCBI BLink). (414 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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