STRINGSTRING
Bra005759 protein (Brassica rapa) - STRING interaction network
"Bra005759" - AT5G02590 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005759AT5G02590 (E=4e-086) | chloroplast lumen common family protein (313 aa)    
Predicted Functional Partners:
Bra037596
AT3G18230 (E=5e-215) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (643 aa)
           
  0.573
Bra022307
AT3G18270 (E=7e-179) CYP77A5P | CYP77A5P; catalytic (374 aa)
           
  0.573
Bra008097
AT1G73470 (E=1e-149) | unknown protein (356 aa)
   
          0.504
Bra009067
AT5G09995 (E=2e-097) | unknown protein (247 aa)
   
          0.500
Bra020481
AT5G25050 (E=1e-254) | integral membrane transporter family protein (498 aa)
   
          0.497
Bra003900
AT1G72030 (E=6e-098) | GCN5-related N-acetyltransferase (GNAT) family protein (249 aa)
   
          0.496
Bra035516
AT1G32060 (E=1e-099) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (191 aa)
   
          0.494
Bra005633
AT2G32040 (E=6e-235) | integral membrane transporter family protein (507 aa)
   
          0.492
Bra035138
AT1G79710 (E=3e-240) | integral membrane transporter family protein (495 aa)
   
          0.491
Bra009810
AT5G25050 (E=2e-242) | integral membrane transporter family protein (499 aa)
   
          0.491
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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