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Bra005769 protein (Brassica rapa) - STRING interaction network
"Bra005769" - AT5G03555 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005769AT5G03555 (E=8e-242) | permease, cytosine/purines, uracil, thiamine, allantoin family protein (753 aa)    
Predicted Functional Partners:
Bra025031
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (760 aa)
     
  0.886
Bra022023
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (785 aa)
     
  0.886
Bra017569
AT5G46210 (E=0.0) CUL4, ATCUL4 | CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase (786 aa)
     
  0.886
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.771
Bra032148
AT2G23740 (E=0.0) | nucleic acid binding / transcription factor/ zinc ion binding (1366 aa)
       
  0.771
Bra022246
AT3G17810 (E=4e-225) | dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein (432 aa)
 
     
  0.699
Bra021275
AT3G17810 (E=1e-226) | dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein (424 aa)
 
     
  0.698
Bra008908
AT5G12200 (E=9e-268) | dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2) (540 aa)
 
   
  0.674
Bra027730
AT1G64460 (E=3e-149) | phosphatidylinositol 3- and 4-kinase family protein (533 aa)
       
  0.674
Bra027702
AT1G64460 (E=3e-155) | phosphatidylinositol 3- and 4-kinase family protein (498 aa)
       
  0.674
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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