STRINGSTRING
Bra005777 protein (Brassica rapa) - STRING interaction network
"Bra005777" - AT5G03680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005777AT5G03680 (E=3e-212) PTL | PTL (PETAL LOSS); transcription factor (573 aa)    
Predicted Functional Partners:
Bra039146
AT3G01090 (E=4e-272) AKIN10, KIN10 | AKIN10 (Arabidopsis SNF1 kinase homolog 10); protein binding / protein kinase (506 aa)
       
 
  0.627
Bra025379
AT3G29160 (E=2e-289) AKIN11, SnRK1.2, KIN11 | AKIN11 (Arabidopsis SNF1 kinase homolog 11); protein binding / protein kinase (512 aa)
       
 
  0.627
Bra021482
AT3G01090 (E=4e-196) AKIN10, KIN10 | AKIN10 (Arabidopsis SNF1 kinase homolog 10); protein binding / protein kinase (638 aa)
       
 
  0.565
Bra004312
AT1G68480 (E=1e-073) JAG | JAG (JAGGED); nucleic acid binding / transcription factor/ zinc ion binding (251 aa)
           
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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