STRINGSTRING
Bra005784.1-P protein (Brassica rapa) - STRING interaction network
"Bra005784.1-P" - AT3G10090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005784.1-PAT3G10090 (E=7e-023) | 40S ribosomal protein S28 (RPS28A) (64 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.999
Bra028590
AT5G10360 (E=1e-108) EMB3010 | EMB3010 (embryo defective 3010); structural constituent of ribosome (249 aa)
   
  0.999
Bra011291
AT4G31700 (E=6e-100) RPS6 | RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome (250 aa)
   
  0.999
Bra010227
AT4G31700 (E=4e-100) RPS6 | RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome (250 aa)
   
  0.999
Bra009039
AT4G31700 (E=4e-111) RPS6 | RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome (249 aa)
   
  0.999
Bra006056
AT5G10360 (E=4e-098) EMB3010 | EMB3010 (embryo defective 3010); structural constituent of ribosome (249 aa)
   
  0.999
Bra029857
AT3G10620 (E=6e-093) ATNUDX26 | ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26); bis(5’-adenosyl)-pentaphosphatase/ bis(5’-nucleosyl)-tetraphosphatase (asymmetrical) (336 aa)
     
  0.999
Bra016981
AT2G40610 (E=5e-124) ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11 | ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) (786 aa)
     
  0.999
Bra016647
AT2G32060 (E=9e-060) | 40S ribosomal protein S12 (RPS12C) (145 aa)
   
  0.999
Bra026092.1-P
AT2G32060 (E=2e-059) | 40S ribosomal protein S12 (RPS12C) (120 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]