STRINGSTRING
Bra005787 protein (Brassica rapa) - STRING interaction network
"Bra005787" - AT5G03880 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005787AT5G03880 (E=6e-145) | electron carrier (358 aa)    
Predicted Functional Partners:
Bra018502
AT4G04610 (E=3e-030) APR1, APR, PRH19, ATAPR1 | APR1 (APS REDUCTASE 1); adenylyl-sulfate reductase (172 aa)
   
          0.488
Bra003269
AT3G57140 (E=0.0) SDP1-LIKE | patatin-related (787 aa)
   
          0.487
Bra028805
AT5G04040 (E=0.0) SDP1 | SDP1 (SUGAR-DEPENDENT1); triacylglycerol lipase (806 aa)
   
          0.484
Bra005789
AT5G04040 (E=0.0) SDP1 | SDP1 (SUGAR-DEPENDENT1); triacylglycerol lipase (759 aa)
   
          0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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