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Bra005789 protein (Brassica rapa) - STRING interaction network
"Bra005789" - AT5G04040 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005789AT5G04040 (E=0.0) SDP1 | SDP1 (SUGAR-DEPENDENT1); triacylglycerol lipase (759 aa)    
Predicted Functional Partners:
Bra038905
AT3G51520 (E=8e-135) | diacylglycerol acyltransferase family (318 aa)
       
  0.794
Bra012851
AT3G51520 (E=2e-128) | diacylglycerol acyltransferase family (317 aa)
       
  0.794
Bra030052
AT1G27480 (E=4e-203) | lecithin-cholesterol acyltransferase family protein / LACT family protein (430 aa)
     
 
  0.788
Bra023426
AT5G13640 (E=0.0) ATPDAT, PDAT | ATPDAT; phosphatidylcholine-sterol O-acyltransferase (597 aa)
     
 
  0.788
Bra008812
AT5G13640 (E=0.0) ATPDAT, PDAT | ATPDAT; phosphatidylcholine-sterol O-acyltransferase (666 aa)
     
 
  0.788
Bra036406
AT2G15230 (E=3e-206) ATLIP1 | ATLIP1 (Arabidopsis thaliana lipase 1); galactolipase/ hydrolase/ phospholipase/ triacylglycerol lipase (395 aa)
   
 
  0.767
Bra013430
AT4G19860 (E=4e-288) | lecithin-cholesterol acyltransferase family protein / LACT family protein (533 aa)
     
 
  0.762
Bra012531
AT4G19860 (E=3e-264) | lecithin-cholesterol acyltransferase family protein / LACT family protein (536 aa)
     
 
  0.762
Bra039003
AT2G19450 (E=1e-241) TAG1, AS11, ABX45, DGAT1, RDS1, ATDGAT | TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1); diacylglycerol O-acyltransferase (497 aa)
         
  0.755
Bra036722
AT2G19450 (E=1e-250) TAG1, AS11, ABX45, DGAT1, RDS1, ATDGAT | TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1); diacylglycerol O-acyltransferase (503 aa)
         
  0.755
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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