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Bra005790 protein (Brassica rapa) - STRING interaction network
"Bra005790" - AT5G04040 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005790AT5G04040 (E=6e-050) SDP1 | SDP1 (SUGAR-DEPENDENT1); triacylglycerol lipase (217 aa)    
Predicted Functional Partners:
Bra038905
AT3G51520 (E=8e-135) | diacylglycerol acyltransferase family (318 aa)
       
  0.761
Bra012851
AT3G51520 (E=2e-128) | diacylglycerol acyltransferase family (317 aa)
       
  0.761
Bra032533
AT1G04010 (E=0.0) | phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferase (641 aa)
     
 
  0.754
Bra031998
AT3G03305 (E=0.0) | calcineurin-like phosphoesterase family protein (1200 aa)
     
 
  0.754
Bra030052
AT1G27480 (E=4e-203) | lecithin-cholesterol acyltransferase family protein / LACT family protein (430 aa)
     
 
  0.754
Bra023426
AT5G13640 (E=0.0) ATPDAT, PDAT | ATPDAT; phosphatidylcholine-sterol O-acyltransferase (597 aa)
     
 
  0.754
Bra015285
AT1G04010 (E=0.0) | phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferase (641 aa)
     
 
  0.754
Bra013430
AT4G19860 (E=4e-288) | lecithin-cholesterol acyltransferase family protein / LACT family protein (533 aa)
     
 
  0.754
Bra012531
AT4G19860 (E=3e-264) | lecithin-cholesterol acyltransferase family protein / LACT family protein (536 aa)
     
 
  0.754
Bra008812
AT5G13640 (E=0.0) ATPDAT, PDAT | ATPDAT; phosphatidylcholine-sterol O-acyltransferase (666 aa)
     
 
  0.754
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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