STRINGSTRING
Bra005798 protein (Brassica rapa) - STRING interaction network
"Bra005798" - AT5G04280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005798AT5G04280 (E=6e-101) | glycine-rich RNA-binding protein (306 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.995
Bra000894
AT1G61580 (E=2e-061) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (999 aa)
     
  0.982
Bra036994
AT3G23070 (E=4e-074) | RNA binding (741 aa)
       
  0.979
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
       
  0.971
Bra003085
AT5G53060 (E=1e-265) | KH domain-containing protein (639 aa)
     
  0.968
Bra022624
AT5G53060 (E=5e-213) | KH domain-containing protein (661 aa)
     
  0.964
Bra029146
AT5G52040 (E=1e-106) ATRSP41 | ATRSP41; RNA binding / nucleic acid binding / nucleotide binding (418 aa)
     
  0.963
Bra036267
AT4G02430 (E=4e-088) | pre-mRNA splicing factor, putative / SR1 protein, putative (312 aa)
     
  0.961
Bra040091
AT3G26560 (E=5e-178) | ATP-dependent RNA helicase, putative (791 aa)
     
  0.959
Bra025211
AT3G26560 (E=0.0) | ATP-dependent RNA helicase, putative (1171 aa)
     
  0.959
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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