STRINGSTRING
Bra005816 protein (Brassica rapa) - STRING interaction network
"Bra005816" - AT5G04740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005816AT5G04740 (E=3e-138) | ACT domain-containing protein (291 aa)    
Predicted Functional Partners:
Bra017221
AT2G36840 (E=1e-210) | ACT domain-containing protein (406 aa)
           
  0.575
Bra009832
AT5G25320 (E=8e-253) | ACT domain-containing protein (499 aa)
           
  0.551
Bra019765
AT1G12420 (E=5e-237) ACR8 | ACR8; amino acid binding (441 aa)
           
  0.526
Bra016773
AT1G12420 (E=6e-235) ACR8 | ACR8; amino acid binding (441 aa)
           
  0.526
Bra019357
AT4G22780 (E=2e-227) ACR7 | ACR7; amino acid binding (450 aa)
           
  0.504
Bra036530
AT5G25060 (E=0.0) | RNA recognition motif (RRM)-containing protein (935 aa)
           
  0.483
Bra033831
AT2G39570 (E=8e-067) | ACT domain-containing protein (433 aa)
           
  0.483
Bra017063
AT2G39570 (E=3e-203) | ACT domain-containing protein (406 aa)
           
  0.483
Bra011346
AT4G32420 (E=6e-101) | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (772 aa)
           
  0.482
Bra033493
AT4G15545 (E=8e-139) | unknown protein (335 aa)
           
  0.479
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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