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Bra005817 protein (Brassica rapa) - STRING interaction network
"Bra005817" - AT5G04750 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005817AT5G04750 (E=3e-020) | F1F0-ATPase inhibitor protein, putative (89 aa)    
Predicted Functional Partners:
Bra018484
AT4G12550 (E=1e-029) AIR1 | AIR1; lipid binding (191 aa)
           
  0.483
Bra018483
AT4G12550 (E=2e-029) AIR1 | AIR1; lipid binding (111 aa)
           
  0.483
Bra002236
AT5G19440 (E=7e-172) | cinnamyl-alcohol dehydrogenase, putative (CAD) (330 aa)
           
  0.416
Bra031666
AT1G09500 (E=6e-136) | cinnamyl-alcohol dehydrogenase family / CAD family (316 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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