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STRINGSTRING
Bra005819.1-P protein (Brassica rapa) - STRING interaction network
"Bra005819.1-P" - Uncharacterized protein in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005819.1-PUncharacterized protein; AT5G04770 (E=4e-275) ATCAT6, CAT6 | CAT6 (CATIONIC AMINO ACID TRANSPORTER 6); amino acid transmembrane transporter/ basic amino acid transmembrane transporter/ cationic amino acid transmembrane transporter (583 aa)    
Predicted Functional Partners:
Bra039735.1-P
Uncharacterized protein; AT5G49630 (E=1e-253) AAP6 | AAP6 (AMINO ACID PERMEASE 6); acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter (470 aa)
       
 
  0.667
Bra015673.1-P
Uncharacterized protein; AT1G77380 (E=1e-253) AAP3, ATAAP3 | AAP3; amino acid transmembrane transporter (476 aa)
           
  0.662
Bra040549.1-P
Uncharacterized protein; AT1G61270 (E=2e-221) | lysine and histidine specific transporter, putative (448 aa)
     
   
  0.643
Bra036939.1-P
Uncharacterized protein; AT1G44100 (E=1e-206) AAP5 | AAP5; amino acid transmembrane transporter/ basic amino acid transmembrane transporter (476 aa)
           
  0.582
Bra032199.1-P
Uncharacterized protein; AT1G44100 (E=1e-222) AAP5 | AAP5; amino acid transmembrane transporter/ basic amino acid transmembrane transporter (487 aa)
           
  0.582
Bra014020.1-P
Uncharacterized protein; AT1G44100 (E=3e-224) AAP5 | AAP5; amino acid transmembrane transporter/ basic amino acid transmembrane transporter (481 aa)
           
  0.582
Bra027411.1-P
Uncharacterized protein; AT3G13620 (E=1e-254) | amino acid permease family protein (477 aa)
   
 
  0.571
Bra001514.1-P
Uncharacterized protein; AT3G13620 (E=4e-250) | amino acid permease family protein (477 aa)
   
 
  0.571
Bra000659.1-P
Uncharacterized protein; AT4G08900 (E=4e-178) | arginase; Belongs to the arginase family (341 aa)
         
  0.568
Bra028753.1-P
Uncharacterized protein; AT1G07780 (E=6e-128) PAI1, TRP6 | PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase (276 aa)
     
 
  0.550
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica rapa, Brassica rapa L., field mustard
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