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Bra005823 protein (Brassica rapa) - STRING interaction network
"Bra005823" - AT5G04850 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005823AT5G04850 (E=1e-110) VPS60.2 | VPS60.2 (238 aa)    
Predicted Functional Partners:
Bra018640
AT2G27600 (E=1e-227) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (430 aa)
     
  0.981
Bra012009
AT2G27600 (E=2e-222) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (433 aa)
     
  0.981
Bra000503
AT2G27600 (E=1e-236) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (433 aa)
     
  0.981
Bra015055
AT4G29160 (E=9e-040) SNF7.1 | SNF7.1 (156 aa)
     
  0.981
Bra016022
AT1G73030 (E=9e-093) VPS46.2 | VPS46.2 (203 aa)
     
  0.977
Bra008067
AT1G73030 (E=2e-053) VPS46.2 | VPS46.2 (174 aa)
     
  0.977
Bra003859
AT1G73030 (E=7e-093) VPS46.2 | VPS46.2 (203 aa)
     
  0.977
Bra036700
AT2G19830 (E=7e-082) SNF7.2, VPS32 | SNF7.2 (212 aa)
     
0.970
Bra011085
AT4G29160 (E=3e-066) SNF7.1 | SNF7.1 (212 aa)
     
0.970
Bra039023
AT2G19830 (E=2e-074) SNF7.2, VPS32 | SNF7.2 (215 aa)
     
0.970
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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