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Bra005827 protein (Brassica rapa) - STRING interaction network
"Bra005827" - AT5G04900 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005827AT5G04900 (E=1e-170) | short-chain dehydrogenase/reductase (SDR) family protein (347 aa)    
Predicted Functional Partners:
Bra015335
AT1G04620 (E=8e-252) | coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (464 aa)
     
  0.925
Bra032697
AT4G13250 (E=2e-133) | short-chain dehydrogenase/reductase (SDR) family protein (529 aa)
 
 
0.740
Bra036000
AT5G43860 (E=2e-154) ATCLH2, CLH2 | ATCLH2; chlorophyllase (321 aa)
         
  0.728
Bra027508
AT5G43860 (E=1e-151) ATCLH2, CLH2 | ATCLH2; chlorophyllase (318 aa)
         
  0.725
Bra034882
AT4G13250 (E=1e-247) | short-chain dehydrogenase/reductase (SDR) family protein (497 aa)
 
 
0.712
Bra014760
AT3G55290 (E=2e-096) | short-chain dehydrogenase/reductase (SDR) family protein (230 aa)
 
 
  0.696
Bra023436
AT5G13800 (E=1e-236) | hydrolase, alpha/beta fold family protein (484 aa)
     
  0.685
Bra006215
AT5G13800 (E=2e-227) | hydrolase, alpha/beta fold family protein (488 aa)
     
  0.685
Bra000441
AT2G47130 (E=3e-115) | short-chain dehydrogenase/reductase (SDR) family protein (273 aa)
 
 
  0.685
Bra039945
AT2G47130 (E=2e-113) | short-chain dehydrogenase/reductase (SDR) family protein (258 aa)
 
 
  0.681
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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