STRINGSTRING
Bra005828 protein (Brassica rapa) - STRING interaction network
"Bra005828" - AT5G04930 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005828AT5G04930 (E=0.0) ALA1 | ALA1 (aminophospholipid ATPase1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (1150 aa)    
Predicted Functional Partners:
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
   
 
  0.841
Bra026722
AT1G16360 (E=3e-177) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (681 aa)
     
 
  0.765
Bra034736
AT3G12740 (E=2e-168) ALIS1 | ALIS1 (ALA-INTERACTING SUBUNIT 1); phospholipid transporter (343 aa)
     
 
  0.764
Bra030808
AT1G54320 (E=1e-170) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (361 aa)
     
 
  0.764
Bra017577
AT5G46150 (E=9e-170) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (342 aa)
     
 
  0.764
Bra003610
AT1G79450 (E=1e-175) ALIS5 | ALIS5 (ALA-Interacting Subunit 5) (342 aa)
     
 
  0.764
Bra001467
AT3G12740 (E=2e-169) ALIS1 | ALIS1 (ALA-INTERACTING SUBUNIT 1); phospholipid transporter (349 aa)
     
 
  0.764
Bra027641
AT1G63440 (E=0.0) HMA5 | HMA5 (HEAVY METAL ATPASE 5); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (1192 aa)
   
  0.748
Bra039194
AT4G37270 (E=0.0) HMA1, ATHMA1 | HMA1; ATPase/ cadmium-transporting ATPase/ calcium-transporting ATPase/ copper-exporting ATPase/ zinc transporting ATPase (774 aa)
   
  0.746
Bra038842
AT2G19110 (E=0.0) HMA4 | HMA4; cadmium ion transmembrane transporter/ cadmium-transporting ATPase/ zinc ion transmembrane transporter (1271 aa)
   
  0.746
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (15%) [HD]