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Bra005832 protein (Brassica rapa) - STRING interaction network
"Bra005832" - AT5G04960 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
Bra005832AT5G04960 (E=1e-252) | pectinesterase family protein ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (570 aa)    
Predicted Functional Partners:
Bra020859
AT4G22080 (E=4e-216) | pectate lyase family protein (395 aa)
       
  0.792
Bra019730
AT1G11920 (E=4e-202) | pectate lyase family protein (385 aa)
       
  0.792
Bra013585
AT4G22080 (E=1e-218) | pectate lyase family protein (393 aa)
       
  0.792
Bra030510
AT1G02790 (E=1e-201) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (420 aa)
       
  0.739
Bra010873
AT1G02790 (E=2e-197) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (421 aa)
       
  0.739
Bra010872
AT1G02790 (E=8e-200) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (420 aa)
       
  0.739
Bra000327
AT1G43080 (E=2e-163) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (474 aa)
       
  0.699
Bra009375
AT5G09280 (E=4e-141) | pectate lyase family protein (378 aa)
       
  0.691
Bra040034
AT3G07840 (E=1e-190) | polygalacturonase, putative / pectinase, putative (397 aa)
       
  0.603
Bra040034.1-P
AT3G07840 (E=1e-190) | polygalacturonase, putative / pectinase, putative (397 aa)
       
  0.603
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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