STRINGSTRING
Bra005833 protein (Brassica rapa) - STRING interaction network
"Bra005833" - AT5G04970 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005833AT5G04970 (E=8e-279) | pectinesterase, putative (593 aa)    
Predicted Functional Partners:
Bra007483
AT3G59850 (E=3e-195) | polygalacturonase, putative / pectinase, putative (388 aa)
   
 
  0.907
Bra009375
AT5G09280 (E=4e-141) | pectate lyase family protein (378 aa)
       
  0.906
Bra037676
AT2G43890 (E=1e-208) | polygalacturonase, putative / pectinase, putative (394 aa)
   
 
  0.904
Bra004791
AT2G43890 (E=2e-214) | polygalacturonase, putative / pectinase, putative (394 aa)
   
 
  0.904
Bra004789
AT2G43880 (E=1e-186) | polygalacturonase, putative / pectinase, putative (367 aa)
       
  0.902
Bra000332
AT2G43870 (E=1e-209) | polygalacturonase, putative / pectinase, putative (385 aa)
       
  0.902
Bra020859
AT4G22080 (E=4e-216) | pectate lyase family protein (395 aa)
       
  0.901
Bra019730
AT1G11920 (E=4e-202) | pectate lyase family protein (385 aa)
       
  0.901
Bra013585
AT4G22080 (E=1e-218) | pectate lyase family protein (393 aa)
       
  0.901
Bra030510
AT1G02790 (E=1e-201) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (420 aa)
       
  0.901
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (11%) [HD]